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1

A dynamic Bayesian nonlinear mixed-effects model of HIV response incorporating medication adherence, drug resistance and covariates

Huang, Yangxin, Wu, Hulin, Holden-Wiltse, Jeanne, Acosta, Edward P.

Journal:

The Annals of Applied Statistics

Year:

2011

Language:

english

File:

PDF, 470 KB

english, 2011

2

Airway gene expression correlates of RSV disease severity and microbiome composition in infants

Chu, Chin-Yi, Qiu, Xing, McCall, Matthew N, Wang, Lu, Corbett, Anthony, Holden-Wiltse, Jeanne, Slaunwhite, Christopher, Grier, Alex, Gill, Steven R, Pryhuber, Gloria S, Falsey, Ann R, Topham, David J,

Journal:

The Journal of Infectious Diseases

Year:

2020

File:

PDF, 1.16 MB

2020

3

Eight practices for data management to enable team data science

McDavid, Andrew, Corbett, Anthony M., Dutra, Jennifer L., Straw, Andrew G., Topham, David J., Pryhuber, Gloria S., Caserta, Mary T., Gill, Steven R., Scheible, Kristin M., Holden-Wiltse, Jeanne

Journal:

Journal of Clinical and Translational Science

Year:

2020

File:

PDF, 592 KB

2020

4

Impact of prematurity and nutrition on the developing gut microbiome and preterm infant growth

Grier, Alex, Qiu, Xing, Bandyopadhyay, Sanjukta, Holden-Wiltse, Jeanne, Kessler, Haeja A., Gill, Ann L., Hamilton, Brooke, Huyck, Heidie, Misra, Sara, Mariani, Thomas J., Ryan, Rita M., Scholer, Lori,

Journal:

Year:

2017

Language:

english

File:

PDF, 1.23 MB

english, 2017

5

Neonatal gut and respiratory microbiota: coordinated development through time and space

Grier, Alex, McDavid, Andrew, Wang, Bokai, Qiu, Xing, Java, James, Bandyopadhyay, Sanjukta, Yang, Hongmei, Holden-Wiltse, Jeanne, Kessler, Haeja A, Gill, Ann L, Huyck, Heidie, Falsey, Ann R, Topham, D

Journal:

Year:

2018

Language:

english

File:

PDF, 2.72 MB

english, 2018

6

Statistical Estimation & Inference of Cell Counts from ELISPOT Limiting Dilution Assays

Yang, Hongmei, Topham, David J., Holden-Wiltse, Jeanne, Wu, Hulin

Journal:

Journal of Biopharmaceutical Statistics

Year:

2013

Language:

english

File:

PDF, 1.70 MB

english, 2013

7

An Improved Method for Estimating Antibody Titers in Microneutralization Assay Using Green Fluorescent Protein

Yang, Hongmei, Baker, Steven F., González, Mario E., Topham, David J., Martínez-Sobrido, Luis, Zand, Martin, Holden-Wiltse, Jeanne, Wu, Hulin

Journal:

Journal of Biopharmaceutical Statistics

Year:

2015

Language:

english

File:

PDF, 12.57 MB

english, 2015

8

Dynamic changes in the CD4 T cell transcriptome are associated with disease severity during primary RSV infection in young infants

Mariani, Thomas J, Qiu, Xing, Chu, Chin Yi, Wang, Lu, Thakar, Juilee, Holden-Wiltse, Jeanne, Corbett, Anthony, Topham, David J, Falsey, Ann R, Caserta, Mary T, Walsh, Edward E

Journal:

The Journal of Infectious Diseases

Year:

2017

Language:

english

File:

PDF, 1.49 MB

english, 2017

9

Delavirdine Susceptibilities and Associated Reverse Transcriptase Mutations in Human Immunodeficiency Virus Type 1 Isolates from Patients in a Phase I/II Trial of Delavirdine Monotherapy (ACTG 260)

Demeter, L. M., Shafer, R. W., Meehan, P. M., Holden-Wiltse, J., Fischl, M. A., Freimuth, W. W., Para, M. F., Reichman, R. C.

Journal:

Antimicrobial Agents and Chemotherapy

Year:

2000

Language:

english

File:

PDF, 222 KB

english, 2000

10

[American Thoracic Society American Thoracic Society 2019 International Conference, May 17-22, 2019 - Dallas, TX - ()] A61. EPITHELIAL BIOLOGY - Respiratory Epithelial Cell Regulation of Pulmonary Immune Surveillance

Bandyopadhyay, G., Huyck, H.L., Bhattacharya, S., Misra, R., Lillis, J., Myers, J., Romas, S., Holden-Wiltse, J., Ashton, J., Mariani, T.J., Pryhuber, G.S.

File:

PDF, 20 KB

11

Food preferences in human obesity: Carbohydrates versus fats

Adam Drewnowski, Candace Kurth, Jeanne Holden-Wiltse, Jennifer Saari

Journal:

Year:

1992

Language:

english

File:

PDF, 1.28 MB

english, 1992

12

Maximum Likelihood Estimation of Titer via a Power Family of Four-Parameter Logistic Model

Yang, Hongmei, Holden-Wiltse, Jeanne, Topham, David J., Treanor, John

Journal:

Journal of Biopharmaceutical Statistics

Year:

2017

Language:

english

File:

PDF, 6.45 MB

english, 2017

13

Fumagillin analog in the treatment of Kaposi's sarcoma: a phase I AIDS Clinical Trial Group study. AIDS Clinical Trial Group No. 215 Team.

Dezube, B J, Von Roenn, J H, Holden-Wiltse, J, Cheung, T W, Remick, S C, Cooley, T P, Moore, J, Sommadossi, J P, Shriver, S L, Suckow, C W, Gill, P S

Journal:

Journal of Clinical Oncology

Year:

1998

Language:

english

File:

PDF, 561 KB

english, 1998

14

Viral Respiratory Infections in Preterm Infants during and after Hospitalization

Caserta, Mary T., Yang, Hongmei, Gill, Steven R., Holden-Wiltse, Jeanne, Pryhuber, Gloria

Journal:

The Journal of Pediatrics

Year:

2017

Language:

english

File:

PDF, 525 KB

english, 2017

15

Modeling of Influenza-Specific CD8+ T Cells during the Primary Response Indicates that the Spleen Is a Major Source of Effectors

Wu, H., Kumar, A., Miao, H., Holden-Wiltse, J., Mosmann, T. R., Livingstone, A. M., Belz, G. T., Perelson, A. S., Zand, M. S., Topham, D. J.

Journal:

The Journal of Immunology

Year:

2011

Language:

english

File:

PDF, 1.10 MB

english, 2011

16

A DYNAMIC BAYESIAN NONLINEAR MIXED-EFFECTS MODEL OF HIV RESPONSE INCORPORATING MEDICATION ADHERENCE, DRUG RESISTANCE AND COVARIATES

Yangxin Huang, Hulin Wu, Jeanne Holden-Wiltse and Edward P. Acosta

Journal:

The Annals of Applied Statistics

Year:

2011

Language:

english

File:

PDF, 2.32 MB

english, 2011

17

Measuring the Severity of Respiratory Illness in the First 2 Years of Life in Preterm and Term Infants

Caserta, Mary T., Yang, Hongmei, Bandyopadhyay, Sanjukta, Qiu, Xing, Gill, Steven R., Java, James, McDavid, Andrew, Falsey, Ann R., Topham, David J., Holden-Wiltse, Jeanne, Scheible, Kristin, Pryhuber

Journal:

The Journal of Pediatrics

Year:

2019

Language:

english

File:

PDF, 743 KB

english, 2019

18

B cell responses to H5 influenza HA in human subjects vaccinated with a drifted variant

Jane Baer, Felix Santiago, Hongmei Yang, Hulin Wu, Jeanne Holden-Wiltse, John Treanor, David J. Topham

Journal:

Year:

2010

Language:

english

File:

PDF, 912 KB

english, 2010

19

Phase I Study of Atevirdine Mesylate (U-87201E) Monotherapy in HIV-1-Infected Patients

Demeter, Lisa M., Meehan, Patricia M., Morse, Gene, Fischl, Margaret A., Para, Michael, Powderly, William, Leedom, John, Holden-Wiltse, Jeanne, Greisberger, Carol, Wood, Kenneth, Timpone, Joseph, Wath

Journal:

Journal of Acquired Immune Deficiency Syndromes & Human Retrovirology

Year:

1998

File:

PDF, 6.29 MB

1998

20

[American Thoracic Society American Thoracic Society 2019 International Conference, May 17-22, 2019 - Dallas, TX - ()] C25. CLINICAL AND TRANSLATIONAL STUDIES IN RARE LUNG DISEASE - Airway and Airspace Morphometry in Human Pediatric Lung by UltraHRCT and Thick Section Fluorescence Microscopy

Pryhuber, G.S., Poole, C., Krenitsky, D., Baran, T., Foster, T., Huyck, H., Bandyopadhyay, G., Howell, A., Moreland, M., Lisa, R., Dutra, J., Holden-Wiltse, J., Misra, R., Mariani, T.J.

File:

PDF, 21 KB

21

Directed selection of influenza virus produces antigenic variants that match circulating human virus isolates and escape from vaccine-mediated immune protection

DeDiego, Marta L., Anderson, Christopher S., Yang, Hongmei, Holden-Wiltse, Jeanne, Fitzgerald, Theresa, Treanor, John. J., Topham, David J.

Journal:

Year:

2016

Language:

english

File:

PDF, 565 KB

english, 2016

22

Transcriptomic Biomarkers to Discriminate Bacterial from Nonbacterial Infection in Adults Hospitalized with Respiratory Illness

Bhattacharya, Soumyaroop, Rosenberg, Alex F., Peterson, Derick R., Grzesik, Katherine, Baran, Andrea M., Ashton, John M., Gill, Steven R., Corbett, Anthony M., Holden-Wiltse, Jeanne, Topham, David J.,

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 1.88 MB

english, 2017

23

Dose-escalation, phase I/II study of azithromycin and pyrimethamine for the treatment of toxoplasmic encephalitis in AIDS

Jacobson, Jeffrey M., Hafner, Richard, Remington, Jack, Farthing, Charles, Holden-Wiltse, Jeanne, Bosler, Elizabeth M., Harris, Carol, Jayaweera, Dushyantha T., Roque, Clemente, Luft, Benjamin J.

Journal:

Year:

2001

Language:

english

File:

PDF, 150 KB

english, 2001

24

Microbiome-Transcriptome Interactions Related to Severity of Respiratory Syncytial Virus Infection

Sonawane, Abhijeet R., Tian, Liang, Chu, Chin-Yi, Qiu, Xing, Wang, Lu, Holden-Wiltse, Jeanne, Grier, Alex, Gill, Steven R., Caserta, Mary T., Falsey, Ann R., Topham, David J., Walsh, Edward E., Marian

Journal:

Scientific Reports

Year:

2019

Language:

english

File:

PDF, 1.93 MB

english, 2019

25

[American Thoracic Society American Thoracic Society 2019 International Conference, May 17-22, 2019 - Dallas, TX - ()] D21. HOST RESPONSE TO LUNG INFECTIONS - Insufficiency in Airway Interferon Activation Defines Clinically Severe Infant RSV Infection

Chu, C.-Y., Wang, L., Qiu, X., McCall, M., Corbett, A., Holden-Wiltse, J., Slaunwhite, C., Wang, Q., Anderson, C.S., Grier, A., Gill, S.R., Falsey, A.R., Topham, D.J., Caserta, M.T., Walsh, E.E., Mari

File:

PDF, 20 KB

26

Come from away: Best practices in mini-sabbaticals for the development of young investigators: a White Paper by the SEQUIN (mini-Sabbatical Evaluation and QUality ImprovemeNt) Group

Pillinger, Michael H., Lemon, Stephenie C., Zand, Martin S., Foster, P. Jeffrey, Merchant, Jeanne S., Kimberly, Robert, Allison, Jeroan, Cronstein, Bruce N., Galeano, Claudia, Holden-Wiltse, Jeanne, T

Journal:

Journal of Clinical and Translational Science

Year:

2019

Language:

english

File:

PDF, 649 KB

english, 2019

27

Temporal Dysbiosis of Infant Nasal Microbiota Relative to Respiratory Syncytial Virus Infection

Grier, Alex, Gill, Ann L, Kessler, Haeja A, Corbett, Anthony, Bandyopadhyay, Sanjukta, Java, James, Holden-Wiltse, Jeanne, Falsey, Ann R, Topham, David J, Mariani, Thomas J, Caserta, Mary T, Walsh, Ed

Journal:

The Journal of Infectious Diseases

Year:

2020

File:

PDF, 2.60 MB

2020

28

Quantifying the Early Immune Response and Adaptive Immune Response Kinetics in Mice Infected with Influenza A Virus

Miao, H., Hollenbaugh, J. A., Zand, M. S., Holden-Wiltse, J., Mosmann, T. R., Perelson, A. S., Wu, H., Topham, D. J.

Journal:

Journal of Virology

Year:

2010

Language:

english

File:

PDF, 1.18 MB

english, 2010

29

High-Resolution Temporal Response Patterns to Influenza Vaccine Reveal a Distinct Human Plasma Cell Gene Signature

Henn, Alicia D., Wu, Shuang, Qiu, Xing, Ruda, Melissa, Stover, Michael, Yang, Hongmei, Liu, Zhiping, Welle, Stephen L., Holden-Wiltse, Jeanne, Wu, Hulin, Zand, Martin S.

Journal:

Scientific Reports

Year:

2013

Language:

english

File:

PDF, 2.68 MB

english, 2013

30

Developmentally determined reduction in CD31 during gestation is associated with CD8+ T cell effector differentiation in preterm infants

Scheible, Kristin M., Emo, Jason, Yang, Hongmei, Holden-Wiltse, Jeanne, Straw, Andrew, Huyck, Heidie, Misra, Sara, Topham, David J., Ryan, Rita M., Reynolds, Anne Marie, Mariani, Thomas J., Pryhuber,

Journal:

Clinical Immunology

Year:

2015

Language:

english

File:

PDF, 1.40 MB

english, 2015

31

The Healthy Infant Nasal Transcriptome: A Benchmark Study

Chu, Chin-Yi, Qiu, Xing, Wang, Lu, Bhattacharya, Soumyaroop, Lofthus, Gerry, Corbett, Anthony, Holden-Wiltse, Jeanne, Grier, Alex, Tesini, Brenda, Gill, Steven R., Falsey, Ann R., Caserta, Mary T., Wa

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 1.42 MB

english, 2016

32

Development of a Global Respiratory Severity Score (GRSS) for Respiratory Syncytial Virus Infection in Infants

Caserta, Mary T., Qiu, Xing, Tesini, Brenda, Wang, Lu, Murphy, Amy, Corbett, Anthony, Falsey, Ann R., Holden-Wiltse, Jeanne, Walsh, Edward E.

Journal:

The Journal of Infectious Diseases

Year:

2016

Language:

english

File:

PDF, 625 KB

english, 2016

33

T-Cell Responses in Adults During Natural Respiratory Syncytial Virus Infection

Roumanes, D, Falsey, A R, Quataert, S, Secor-Socha, S, Lee, F E -H, Yang, H, Bandyopadhyay, S, Holden-Wiltse, J, Topham, D J, Walsh, E E

Journal:

The Journal of Infectious Diseases

Year:

2018

Language:

english

File:

PDF, 1.00 MB

english, 2018

34

Human Immunodeficiency Virus Type 1 Protease Inhibitor Drug-Resistant Mutants Give Discordant Results When Compared in Single-Cycle and Multiple-Cycle Fitness Assays

Dykes, C., Wu, H., Sims, M., Holden-Wiltse, J., Demeter, L. M.

Journal:

Journal of Clinical Microbiology

Year:

2010

Language:

english

File:

PDF, 1.05 MB

english, 2010

35

Virus–specific aNtibody, Viral Load and Disease Severity in Respiratory Syncytial Virus Infection

Walsh, Edward E, Wang, Lu, Falsey, Ann R, Qiu, Xing, Corbett, Anthony, Holden-Wiltse, Jeanne, Mariani, Thomas J, Topham, David J, Caserta, Mary T

Journal:

The Journal of Infectious Diseases

Year:

2018

Language:

english

File:

PDF, 1.23 MB

english, 2018

36

Microbiome-Transcriptome Interactions Related to Severity of Respiratory Syncytial Virus Infection

Sonawane, Abhijeet R., Tian, Liang, Chu, Chin-Yi, Qiu, Xing, Wang, Lu, Holden-Wiltse, Jeanne, Grier, Alex, Gill, Steven R., Caserta, Mary T., Falsey, Ann R., Topham, David J., Walsh, Edward E., Marian

Journal:

Scientific Reports

Year:

2019

File:

PDF, 1.93 MB

2019

37

415. Airway Gene-Expression Classifiers for Respiratory Syncytial Virus (RSV) Disease Severity in Infants

Caserta, Mary T, Wang, Lu, Chu, Chin-Yi, Slaunwhite, Christopher, Holden-Wiltse, Jeanne, Corbett, Anthony, Falsey, Ann R, Topham, David, Mariani, Thomas, Walsh, Edward E, Qiu, Xing

Journal:

Open Forum Infectious Diseases

Year:

2019

File:

PDF, 297 KB

2019

38

Safety and Immunogenicity of a Baculovirus-Expressed Hemagglutinin Influenza Vaccine

Treanor, John J., Schiff, Gilbert M., Hayden, Frederick G., Brady, Rebecca C., Hay, C. Mhorag, Meyer, Anthony L., Holden-Wiltse, Jeanne, Liang, Hua, Gilbert, Adam, Cox, Manon

Journal:

JAMA The Journal of the American Medical Association

Year:

2007

Language:

english

File:

PDF, 129 KB

english, 2007

39

Simulation and Prediction of the Adaptive Immune Response to Influenza A Virus Infection

Lee, H. Y., Topham, D. J., Park, S. Y., Hollenbaugh, J., Treanor, J., Mosmann, T. R., Jin, X., Ward, B. M., Miao, H., Holden-Wiltse, J., Perelson, A. S., Zand, M., Wu, H.

Journal:

Journal of Virology

Year:

2009

Language:

english

File:

PDF, 1.98 MB

english, 2009

40

Characterizing Emerging Canine H3 Influenza Viruses

Martinez-Sobrido, Luis, Blanco-Lobo, Pilar, Rodriguez, Laura, Fitzgerald, Theresa, Zhang, Hanyuan, Nguyen, Phuong, Anderson, Christopher S., Holden-Wiltse, Jeanne, Bandyopadhyay, Sanjukta, Nogales, Ai

Journal:

Year:

2020

File:

PDF, 15.38 MB

2020

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